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BMCBI
2006
116views more  BMCBI 2006»
13 years 7 months ago
Optimized mixed Markov models for motif identification
Background: Identifying functional elements, such as transcriptional factor binding sites, is a fundamental step in reconstructing gene regulatory networks and remains a challengi...
Weichun Huang, David M. Umbach, Uwe Ohler, Leping ...
BMCBI
2006
130views more  BMCBI 2006»
13 years 7 months ago
CARMA: A platform for analyzing microarray datasets that incorporate replicate measures
Background: The incorporation of statistical models that account for experimental variability provides a necessary framework for the interpretation of microarray data. A robust ex...
Kevin A. Greer, Matthew R. McReynolds, Heddwen L. ...
AAAI
2006
13 years 9 months ago
Collective Construction Using Lego Robots
hibition: Extended Abstract Social insects, such as ants and termites, collectively build large and complex structures, with many individuals following simple rules and no centrali...
Crystal Schuil, Matthew Valente, Justin Werfel, Ra...
SIGSOFT
2003
ACM
14 years 8 months ago
ARCHER: using symbolic, path-sensitive analysis to detect memory access errors
Memory corruption errors lead to non-deterministic, elusive crashes. This paper describes ARCHER (ARray CHeckER) a static, effective memory access checker. ARCHER uses path-sensit...
Yichen Xie, Andy Chou, Dawson R. Engler
BMCBI
2008
98views more  BMCBI 2008»
13 years 7 months ago
MTAP: The Motif Tool Assessment Platform
Background: In recent years, substantial effort has been applied to de novo regulatory motif discovery. At this time, more than 150 software tools exist to detect regulatory bindi...
Daniel Quest, Kathryn Dempsey, Mohammad Shafiullah...