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JCPHY
2011
192views more  JCPHY 2011»
12 years 10 months ago
Fast analysis of molecular dynamics trajectories with graphics processing units - Radial distribution function histogramming
The calculation of radial distribution functions (RDFs) from molecular dynamics trajectory data is a common and computationally expensive analysis task. The rate limiting step in ...
Benjamin G. Levine, John E. Stone, Axel Kohlmeyer
BIBE
2007
IEEE
129views Bioinformatics» more  BIBE 2007»
13 years 11 months ago
Statistial Analysis of nucleosome occupancy and histone modification data
Abstract-- In eukaryotic cells, genomic DNAs wrap around beadlike molecules, called nucleosomes, so as to pack more compactly in the nucleus of the cell. The nucleosome is made up ...
Guo-Cheng Yuan, Jun S. Liu
ICC
2007
IEEE
269views Communications» more  ICC 2007»
14 years 1 months ago
A Routing-Driven Key Management Scheme for Heterogeneous Sensor Networks
–The many-to-one traffic pattern dominates in sensor networks, where a large number of sensor nodes send data to one sink. A sensor node may only communicate with a small portion...
Xiaojiang Du, Yang Xiao, Song Ci, Mohsen Guizani, ...
SEMCO
2007
IEEE
14 years 1 months ago
CDIP: Collection-Driven, yet Individuality-Preserving Automated Blog Tagging
With the success of blogs as popular information sharing media, searches on blogs have become popular. In the blogosphere, tagging is used as a means of annotating blog entries wi...
Jong Wook Kim, K. Selçuk Candan, Jun'ichi T...
BIBM
2008
IEEE
105views Bioinformatics» more  BIBM 2008»
14 years 1 months ago
Energy Profile and Secondary Structure Impact shRNA Efficacy
Many characteristics of functional synthetic siRNAs have been identified. Our three-phase algorithm was developed to design siRNA on a wholegenome scale based on these characteris...
Hong Zhou, Xiao Zeng