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WABI
2009
Springer
156views Bioinformatics» more  WABI 2009»
14 years 3 months ago
Phylogenetic Comparative Assembly
Recent high throughput sequencing technologies are capable of generating a huge amount of data for bacterial genome sequencing projects. Although current sequence assemblers succes...
Peter Husemann, Jens Stoye
ICASSP
2008
IEEE
14 years 3 months ago
Modeling regulatory sites with higher order position-dependent weight matrices
Identification of regulatory signals in DNA depends on the nature and quality of the patterns of representative sequences. These patterns are constructed from training sets of se...
Hossein Zare, Mostafa Kaveh, Arkady B. Khodursky
ICCS
2005
Springer
14 years 2 months ago
Highly Scalable Algorithms for Robust String Barcoding
: String barcoding is a recently introduced technique for genomic based identification of microorganisms. In this paper we describe the engineering of highly scalable algorithms fo...
Bhaskar DasGupta, Kishori M. Konwar, Ion I. Mandoi...
GCB
2006
Springer
119views Biometrics» more  GCB 2006»
14 years 7 days ago
Comparative Analysis of Cyclic Sequences: Viroids and other Small Circular RNAs
: The analysis of small circular sequences requires specialized tools. While the differences between linear and circular sequences can be neglected in the case of long molecules su...
Axel Mosig, Ivo L. Hofacker, Peter F. Stadler
CEC
2007
IEEE
14 years 2 months ago
Computational chemotaxis in ants and bacteria over dynamic environments
— Chemotaxis can be defined as an innate behavioural response by an organism to a directional stimulus, in which bacteria, and other single-cell or multicellular organisms direct...
Vitorino Ramos, Carlos Fernandes, Agostinho C. Ros...