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JCB
2000
129views more  JCB 2000»
13 years 7 months ago
Prediction of RNA Base Pairing Probabilities on Massively Parallel Computers
We present an implementation of McCaskill's algorithm for computing the base pair probabilities of an RNA molecule for massively parallel message passing architectures. The p...
Martin Fekete, Ivo L. Hofacker, Peter F. Stadler
BMCBI
2010
214views more  BMCBI 2010»
13 years 7 months ago
AutoSOME: a clustering method for identifying gene expression modules without prior knowledge of cluster number
Background: Clustering the information content of large high-dimensional gene expression datasets has widespread application in "omics" biology. Unfortunately, the under...
Aaron M. Newman, James B. Cooper
SGAI
2007
Springer
14 years 1 months ago
Metrics for Mining Multisets
Abstract. We propose a new class of distance measures (metrics) designed for multisets, both of which are a recurrent theme in many data mining applications. One particular instanc...
Walter A. Kosters, Jeroen F. J. Laros
RECOMB
2001
Springer
14 years 8 months ago
Context-specific Bayesian clustering for gene expression data
The recent growth in genomic data and measurements of genome-wide expression patterns allows us to apply computational tools to examine gene regulation by transcription factors. I...
Yoseph Barash, Nir Friedman
SBACPAD
2008
IEEE
126views Hardware» more  SBACPAD 2008»
14 years 2 months ago
A Software Transactional Memory System for an Asymmetric Processor Architecture
Due to the advent of multi-core processors and the consequent need for better concurrent programming abstractions, new synchronization paradigms have emerged. A promising one, kno...
Felipe Goldstein, Alexandro Baldassin, Paulo Cento...