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TSMC
2008
93views more  TSMC 2008»
13 years 7 months ago
Selection of DNA Markers
Given a genome, i.e., a long string over a fixed finite alphabet, the problem is to find short (dis)similar substrings. This computationally intensive task has many biological appl...
Hendrik Jan Hoogeboom, Walter A. Kosters, Jeroen F...
SIGKDD
2010
154views more  SIGKDD 2010»
13 years 2 months ago
A brief survey on sequence classification
Sequence classification has a broad range of applications such as genomic analysis, information retrieval, health informatics, finance, and abnormal detection. Different from the ...
Zhengzheng Xing, Jian Pei, Eamonn J. Keogh
RECOMB
2010
Springer
14 years 2 months ago
A Novel Abundance-Based Algorithm for Binning Metagenomic Sequences Using l-Tuples
Abstract. Metagenomics is the study of microbial communities sampled directly from their natural environment, without prior culturing. Among the computational tools recently develo...
Yu-Wei Wu, Yuzhen Ye
BMCBI
2008
105views more  BMCBI 2008»
13 years 7 months ago
A Bayesian method for calculating real-time quantitative PCR calibration curves using absolute plasmid DNA standards
Background: In real-time quantitative PCR studies using absolute plasmid DNA standards, a calibration curve is developed to estimate an unknown DNA concentration. However, potenti...
Mano Sivaganesan, Shawn Seifring, Manju Varma, Ric...
BMCBI
2006
143views more  BMCBI 2006»
13 years 7 months ago
Fast estimation of the difference between two PAM/JTT evolutionary distances in triplets of homologous sequences
Background: The estimation of the difference between two evolutionary distances within a triplet of homologs is a common operation that is used for example to determine which of t...
Christophe Dessimoz, Manuel Gil, Adrian Schneider,...