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» Bayesian adaptive sequence alignment algorithms
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WABI
2010
Springer
172views Bioinformatics» more  WABI 2010»
13 years 5 months ago
Fast Mapping and Precise Alignment of AB SOLiD Color Reads to Reference DNA
Abstract. Applied Biosystems’ SOLiD system offers a low-cost alternative to the traditional Sanger method of DNA sequencing. We introduce two main algorithms of mapping SOLiD’...
Miklós Csürös, Szilveszter Juhos,...
BMCBI
2006
96views more  BMCBI 2006»
13 years 7 months ago
Structure alignment based on coding of local geometric measures
Background: A structure alignment method based on a local geometric property is presented and its performance is tested in pairwise and multiple structure alignments. In this appr...
Peter L. Chang, Andrew W. Rinne, T. Gregory Dewey
DKE
2008
91views more  DKE 2008»
13 years 7 months ago
SUSAX: Context-specific searching in XML documents using sequence alignment techniques
Keyword searching while very successful in narrowing down the contents of the Web to the pertaining subset of information, has two primary drawbacks. First, the accuracy of the se...
Kajal T. Claypool
WOB
2004
120views Bioinformatics» more  WOB 2004»
13 years 8 months ago
Reconfigurable Systems for Sequence Alignment and for General Dynamic Programming
ABSTRACT. Reconfigurable systolic arrays can be adapted to efficiently resolve a wide spectrum of computational problems; parallelism is naturally explored in systolic arrays and r...
Ricardo P. Jacobi, Mauricio Ayala-Rincón, L...
JCDL
2009
ACM
154views Education» more  JCDL 2009»
14 years 1 months ago
An alignment based system for chord sequence retrieval
Music retrieval systems for Western tonal music digital libraries have to consider rhythmic, timbral, melodic and harmonic information. Most existing retrieval systems only take i...
Pierre Hanna, Matthias Robine, Thomas Rocher