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» Bayesian modelling of shared gene function
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BMCBI
2006
95views more  BMCBI 2006»
13 years 10 months ago
XcisClique: analysis of regulatory bicliques
Background: Modeling of cis-elements or regulatory motifs in promoter (upstream) regions of genes is a challenging computational problem. In this work, set of regulatory motifs si...
Amrita Pati, Cecilia Vasquez-Robinet, Lenwood S. H...
BMCBI
2010
104views more  BMCBI 2010»
13 years 10 months ago
Bidirectional best hit r-window gene clusters
Background: Conserved gene clusters are groups of genes that are located close to one another in the genomes of several species. They tend to code for proteins that have a functio...
Melvin Zhang, Hon Wai Leong
KDD
2004
ACM
237views Data Mining» more  KDD 2004»
14 years 10 months ago
Bayesian Model-Averaging in Unsupervised Learning From Microarray Data
Unsupervised identification of patterns in microarray data has been a productive approach to uncovering relationships between genes and the biological process in which they are in...
Mario Medvedovic, Junhai Guo
ICPR
2006
IEEE
14 years 11 months ago
Exploiting the Geometry of Gene Expression Patterns for Unsupervised Learning
Typical gene expression clustering algorithms are restricted to a specific underlying pattern model while overlooking the possibility that other information carrying patterns may ...
Rave Harpaz, Robert M. Haralick
BMCBI
2008
173views more  BMCBI 2008»
13 years 10 months ago
Gene Vector Analysis (Geneva): A unified method to detect differentially-regulated gene sets and similar microarray experiments
Background: Microarray experiments measure changes in the expression of thousands of genes. The resulting lists of genes with changes in expression are then searched for biologica...
Stephen W. Tanner, Pankaj Agarwal