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» Beta Binders for Biological Interactions
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81
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CMSB
2004
Springer
15 years 6 months ago
Beta Binders for Biological Interactions
This paper presents binders and operators, in the process calculi tradition, to reason about biological interactions. Special binders are added to wrap a process just as membranes ...
Corrado Priami, Paola Quaglia
101
Voted
ENTCS
2008
82views more  ENTCS 2008»
15 years 1 months ago
A Static Analysis for Beta-Binders
We introduce a Control Flow Analysis, that statically approximates the dynamic behaviour of processes, expressed in the Beta-Binders calculus. Our analysis of a system is able to ...
Chiara Bodei
106
Voted
RECOMB
2001
Springer
16 years 1 months ago
Predicting the beta-helix fold from protein sequence data
A method is presented that uses b-strand interactions to predict the parallel right-handed b-helix super-secondary structural motif in protein sequences. A program called BetaWrap...
Phil Bradley, Lenore Cowen, Matthew Menke, Jonatha...
CAINE
2007
15 years 2 months ago
Tracking Compounds and Their Interactions within In Silico Liver
We present multi-scale tracking features for the In Silico Liver (ISL) and their simulation results. The features were developed to support tracking of dynamic pharmacokinetic/pha...
Sunwoo Park, Sean H. J. Kim, Glen E. P. Ropella, C...
102
Voted
BMCBI
2010
88views more  BMCBI 2010»
15 years 1 months ago
Proteome scanning to predict PDZ domain interactions using support vector machines
Background: PDZ domains mediate protein-protein interactions involved in important biological processes through the recognition of short linear motifs in their target proteins. Tw...
Shirley Hui, Gary D. Bader