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» Biclustering of Expression Data Using Simulated Annealing
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BMCBI
2008
155views more  BMCBI 2008»
13 years 8 months ago
Extending pathways based on gene lists using InterPro domain signatures
Background: High-throughput technologies like functional screens and gene expression analysis produce extended lists of candidate genes. Gene-Set Enrichment Analysis is a commonly...
Florian Hahne, Alexander Mehrle, Dorit Arlt, Annem...
WEBDB
2004
Springer
80views Database» more  WEBDB 2004»
14 years 2 months ago
Unraveling the Duplicate-Elimination Problem in XML-to-SQL Query Translation
We consider the scenario where existing relational data is exported as XML. In this context, we look at the problem of translating XML queries into SQL. XML query languages have t...
Rajasekar Krishnamurthy, Raghav Kaushik, Jeffrey F...
ICDCS
2007
IEEE
14 years 2 months ago
Automated Storage Reclamation Using Temporal Importance Annotations
This work focuses on scenarios that require the storage of large amounts of data. Such systems require the ability to either continuously increase the storage space or reclaim spa...
Surendar Chandra, Ashish Gehani, Xuwen Yu
BMCBI
2010
102views more  BMCBI 2010»
13 years 8 months ago
Quantized correlation coefficient for measuring reproducibility of ChIP-chip data
Background: Chromatin immunoprecipitation followed by microarray hybridization (ChIP-chip) is used to study protein-DNA interactions and histone modifications on a genome-scale. T...
Shouyong Peng, Mitzi I. Kuroda, Peter J. Park
BMCBI
2005
201views more  BMCBI 2005»
13 years 8 months ago
Principal component analysis for predicting transcription-factor binding motifs from array-derived data
Background: The responses to interleukin 1 (IL-1) in human chondrocytes constitute a complex regulatory mechanism, where multiple transcription factors interact combinatorially to...
Yunlong Liu, Matthew P. Vincenti, Hiroki Yokota