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JCB
2007
97views more  JCB 2007»
13 years 7 months ago
Parsing Nucleic Acid Pseudoknotted Secondary Structure: Algorithm and Applications
Accurate prediction of pseudoknotted nucleic acid secondary structure is an important computational challenge. Prediction algorithms based on dynamic programming aim to find a st...
Baharak Rastegari, Anne Condon
BMCBI
2006
112views more  BMCBI 2006»
13 years 8 months ago
Distill: a suite of web servers for the prediction of one-, two- and three-dimensional structural features of proteins
Background: We describe Distill, a suite of servers for the prediction of protein structural features: secondary structure; relative solvent accessibility; contact density; backbo...
Davide Baù, Alberto J. M. Martin, Catherine...
JUCS
2010
104views more  JUCS 2010»
13 years 6 months ago
Investigating a Correlation between Subcellular Localization and Fold of Proteins
: When considering the prediction of a structural class for a protein as a classification problem, usually a classifier is based on a feature vector x ∈ Rn , where the features...
Johannes Aßfalg, Jing Gong, Hans-Peter Krieg...
ICASSP
2008
IEEE
14 years 2 months ago
Probabilistic structural alignment of RNA sequences
We propose an algorithm for estimating the common secondary structure, alignment, and posterior base pairing probabilities for two RNA sequences. A definition of structural align...
Arif Ozgun Harmanci, Gaurav Sharma, David H. Mathe...
ISMB
1993
13 years 9 months ago
Protein Structure Prediction: Selecting Salient Features from Large Candidate Pools
Weintroduce a parallel approach, "DT-SELECT," for selecting features used by inductive learning algorithms to predict protein secondary structure. DT-SELECTis able to ra...
Kevin J. Cherkauer, Jude W. Shavlik