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    IJCAI
    2007
    154views Artificial Intelligence» more  IJCAI 2007»
    r-grams: Relational Grams
    13 years 9 months ago
    r-grams: Relational Grams
    Download  www.aaai.org
    We introduce relational grams (r-grams). They upgrade n-grams for modeling relational sequences of atoms. As n-grams, r-grams are based on smoothed n-th order Markov chains. Smoot...
    Niels Landwehr, Luc De Raedt
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    ISMB
    1994
    109views Computational Biology» more  ISMB 1994»
    Optimally Parsing a Sequence into Different Classes Based on Multiple Types of Evidence
    13 years 9 months ago
    Optimally Parsing a Sequence into Different Classes Based on Multiple Types of Evidence
    Download  www.aaai.org
    Weconsider the problem of parsing a sequence into different classes of subsequences.Twocommonexamplesare finding the exons and introns in genomicsequences and identifying the seco...
    Gary D. Stormo, David Haussler
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    BMCBI
    2004
    151views more  BMCBI 2004»
    Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics
    13 years 7 months ago
    Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics
    Download  www.biomedcentral.com
    Background: The general problem of RNA secondary structure prediction under the widely used thermodynamic model is known to be NP-complete when the structures considered include a...
    Jens Reeder, Robert Giegerich
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    NAR
    2007
    129views more  NAR 2007»
    taveRNA: a web suite for RNA algorithms and applications
    13 years 7 months ago
    taveRNA: a web suite for RNA algorithms and applications
    Download  compbio.cs.sfu.ca
    We present taveRNA, a web server package that hosts three RNA web services: alteRNA, inteRNA and pRuNA. alteRNA is a new alternative for RNA secondary structure prediction. It is ...
    Cagri Aksay, Raheleh Salari, Emre Karakoç, ...
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    BMCBI
    2005
    162views more  BMCBI 2005»
    Accelerated probabilistic inference of RNA structure evolution
    13 years 7 months ago
    Accelerated probabilistic inference of RNA structure evolution
    Download  biowiki.org
    Background: Pairwise stochastic context-free grammars (Pair SCFGs) are powerful tools for evolutionary analysis of RNA, including simultaneous RNA sequence alignment and secondary...
    Ian Holmes
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