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» Biochemical Network Stochastic Simulator (BioNetS): software...
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NIPS
2003
13 years 9 months ago
The Diffusion-Limited Biochemical Signal-Relay Channel
Biochemical signal-transduction networks are the biological information-processing systems by which individual cells, from neurons to amoebae, perceive and respond to their chemic...
Peter J. Thomas, Donald J. Spencer, Sierra K. Hamp...
CMSB
2009
Springer
14 years 2 months ago
Modelling Biological Clocks with Bio-PEPA: Stochasticity and Robustness for the Neurospora crassa Circadian Network
Circadian clocks are biochemical networks, present in nearly all living organisms, whose function is to regulate the expression of specific mRNAs and proteins to synchronise rhyth...
Ozgur E. Akman, Federica Ciocchetta, Andrea Degasp...
BMCBI
2010
191views more  BMCBI 2010»
13 years 7 months ago
BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions
Background: Genome-scale metabolic reconstructions under the Constraint Based Reconstruction and Analysis (COBRA) framework are valuable tools for analyzing the metabolic capabili...
Jan Schellenberger, Junyoung O. Park, Tom M. Conra...
JSAI
2005
Springer
14 years 1 months ago
Learning Stochastic Logical Automaton
Abstract. This paper is concerned with algorithms for the logical generalisation of probabilistic temporal models from examples. The algorithms combine logic and probabilistic mode...
Hiroaki Watanabe, Stephen Muggleton
BMCBI
2010
126views more  BMCBI 2010»
13 years 5 months ago
Systematic integration of experimental data and models in systems biology
Background: The behaviour of biological systems can be deduced from their mathematical models. However, multiple sources of data in diverse forms are required in the construction ...
Peter Li, Joseph O. Dada, Daniel Jameson, Irena Sp...