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CEC
2010
IEEE
13 years 4 months ago
Parameter estimation with term-wise decomposition in biochemical network GMA models by hybrid regularized Least Squares-Particle
High-throughput analytical techniques such as nuclear magnetic resonance, protein kinase phosphorylation, and mass spectroscopic methods generate time dense profiles of metabolites...
Prospero C. Naval, Luis G. Sison, Eduardo R. Mendo...
CORR
2011
Springer
191views Education» more  CORR 2011»
13 years 4 months ago
On Approximating Four Covering and Packing Problems
In this paper, we consider approximability issues of the following four problems: triangle packing, full sibling reconstruction, maximum profit coverage and 2-coverage. All of th...
Mary V. Ashley, Tanya Y. Berger-Wolf, Piotr Berman...
CIKM
2010
Springer
13 years 4 months ago
Mining networks with shared items
Recent advances in data processing have enabled the generation of large and complex graphs. Many researchers have developed techniques to investigate informative structures within...
Jun Sese, Mio Seki, Mutsumi Fukuzaki
TCBB
2010
106views more  TCBB 2010»
13 years 4 months ago
Quantifying the Degree of Self-Nestedness of Trees: Application to the Structural Analysis of Plants
In this paper we are interested in the problem of approximating trees by trees with a particular self-nested structure. Self-nested trees are such that all their subtrees of a give...
Christophe Godin, Pascal Ferraro
BMCBI
2011
13 years 4 months ago
Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
Background: The prediction of the structure of large RNAs remains a particular challenge in bioinformatics, due to the computational complexity and low levels of accuracy of state...
Zsuzsanna Sukosd, Bjarne Knudsen, Morten Vaerum, J...