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ENTCS
2010
111views more  ENTCS 2010»
13 years 7 months ago
Modular Verification of Interactive Systems with an Application to Biology
We propose an automata-based formalism for the description of biological systems that allows properties expressed in the universal fragment of CTL to be verified in a modular way....
Peter Drábik, Andrea Maggiolo-Schettini, Pa...
JCP
2008
121views more  JCP 2008»
13 years 10 months ago
Towards Design Space Exploration for Biological Systems
For both embedded systems and biological cell systems, design is a feature that defines their identity. The assembly of different components in designs of both systems can vary wid...
Simon Polstra, Tessa E. Pronk, Andy D. Pimentel, T...
RECOMB
2005
Springer
14 years 10 months ago
The Factor Graph Network Model for Biological Systems
Abstract. We introduce an extended computational framework for studying biological systems. Our approach combines formalization of existing qualitative models that are in wide but ...
Irit Gat-Viks, Amos Tanay, Daniela Raijman, Ron Sh...
BMCBI
2008
163views more  BMCBI 2008»
13 years 10 months ago
The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology
Background: High-throughput genome biological experiments yield large and multifaceted datasets that require flexible and user-friendly analysis tools to facilitate their interpre...
Frédéric Chalmel, Michael Primig
CHI
2006
ACM
14 years 10 months ago
ButterflyNet: a mobile capture and access system for field biology research
Through a study of field biology practices, we observed that biology fieldwork generates a wealth of heterogeneous information, requiring substantial labor to coordinate and disti...
Ron B. Yeh, Chunyuan Liao, Scott R. Klemmer, Fran&...