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» Biological information as set-based complexity
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BMCBI
2008
115views more  BMCBI 2008»
13 years 10 months ago
BioGraphE: high-performance bionetwork analysis using the Biological Graph Environment
Background: Graphs and networks are common analysis representations for biological systems. Many traditional graph algorithms such as k-clique, k-coloring, and subgraph matching h...
George Chin Jr., Daniel G. Chavarría-Mirand...
DILS
2005
Springer
14 years 3 months ago
BioNavigation: Selecting Optimum Paths Through Biological Resources to Evaluate Ontological Navigational Queries
Publicly available biological resources form a complex maze of highly heterogeneous data sources, interconnected by navigational capabilities and applications. Although it offers ...
Zoé Lacroix, Kaushal Parekh, Maria-Esther V...
FPGA
2004
ACM
174views FPGA» more  FPGA 2004»
14 years 3 months ago
A compiled accelerator for biological cell signaling simulations
The simulation of large systems of biochemical reactions is a key part of research into molecular signaling and information processing in biological cells. However, it can be impr...
John F. Keane, Christopher Bradley, Carl Ebeling
CLEIEJ
2006
88views more  CLEIEJ 2006»
13 years 9 months ago
A Stochastic Concurrent Constraint Based Framework to Model and Verify Biological Systems
Concurrent process calculi are powerful formalisms for modelling concurrent systems. The mathematical style underlying process calculi allow to both model and verify properties of...
Carlos Olarte, Camilo Rueda
AIPS
2003
13 years 11 months ago
A Multi-Agent System-driven AI Planning Approach to Biological Pathway Discovery
As genomic and proteomic data is collected from highthroughput methods on a daily basis, subcellular components are identified and their in vitro behavior is characterized. Howev...
Salim Khan, William Gillis, Carl Schmidt, Keith De...