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» Biological information as set-based complexity
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BIOINFORMATICS
2008
172views more  BIOINFORMATICS 2008»
13 years 10 months ago
Fitting a geometric graph to a protein-protein interaction network
Motivation: Finding a good network null model for protein-protein interaction (PPI) networks is a fundamental issue. Such a model would provide insights into the interplay between...
Desmond J. Higham, Marija Rasajski, Natasa Przulj
BMCBI
2010
136views more  BMCBI 2010»
13 years 10 months ago
A hub-attachment based method to detect functional modules from confidence-scored protein interactions and expression profiles
Background: Many research results show that the biological systems are composed of functional modules. Members in the same module usually have common functions. This is useful inf...
Chia-Hao Chin, Shu-Hwa Chen, Chin-Wen Ho, Ming-Tat...
IEEECIT
2005
IEEE
14 years 3 months ago
Case Study: Distance-Based Image Retrieval in the MoBIoS DBMS
Similarity search leveraging distance-based index structures is increasingly being used for complex data types. It has been shown that for high dimensional uniform vectors with si...
Rui Mao, Wenguo Liu, Daniel P. Miranker, Qasim Iqb...
BIBE
2001
IEEE
193views Bioinformatics» more  BIBE 2001»
14 years 1 months ago
GIMS - A Data Warehouse for Storage and Analysis of Genome Sequence and Functional Data
Effective analysis of genome sequences and associated functional data requires access to many different kinds of biological information. For example, when analysing gene expressio...
Mike Cornell, Norman W. Paton, Shengli Wu, Carole ...
IDA
2010
Springer
13 years 11 months ago
A Framework for Path-Oriented Network Simplification
Abstract. We propose a generic framework and methods for simplification of large networks. The methods can be used to improve the understandability of a given network, to complemen...
Hannu Toivonen, Sébastien Mahler, Fang Zhou