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» Biological information as set-based complexity
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BMCBI
2004
151views more  BMCBI 2004»
13 years 9 months ago
A computational approach for ordering signal transduction pathway components from genomics and proteomics Data
Background: Signal transduction is one of the most important biological processes by which cells convert an external signal into a response. Novel computational approaches to mapp...
Yin Liu, Hongyu Zhao
BMCBI
2006
102views more  BMCBI 2006»
13 years 10 months ago
MycoperonDB: a database of computationally identified operons and transcriptional units in Mycobacteria
Background: A key post genomics challenge is to identify how genes in an organism come together and perform physiological functions. An important first step in this direction is t...
Sarita Ranjan, Ranjit Kumar Gundu, Akash Ranjan
NC
2008
122views Neural Networks» more  NC 2008»
13 years 10 months ago
Computation with finite stochastic chemical reaction networks
A highly desired part of the synthetic biology toolbox is an embedded chemical microcontroller, capable of autonomously following a logic program specified by a set of instructions...
David Soloveichik, Matthew Cook, Erik Winfree, Jeh...
CIKM
2010
Springer
13 years 8 months ago
A hierarchical approach to reachability query answering in very large graph databases
The cost of reachability query computation using traditional algorithms such as depth first search or transitive closure has been found to be prohibitive and unacceptable in mass...
Saikat K. Dey, Hasan M. Jamil
CIKM
2010
Springer
13 years 5 months ago
Mining networks with shared items
Recent advances in data processing have enabled the generation of large and complex graphs. Many researchers have developed techniques to investigate informative structures within...
Jun Sese, Mio Seki, Mutsumi Fukuzaki