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» Biological information as set-based complexity
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PODS
2009
ACM
119views Database» more  PODS 2009»
14 years 10 months ago
Exceeding expectations and clustering uncertain data
Database technology is playing an increasingly important role in understanding and solving large-scale and complex scientific and societal problems and phenomena, for instance, un...
Sudipto Guha, Kamesh Munagala
BMCBI
2008
204views more  BMCBI 2008»
13 years 10 months ago
EST2uni: an open, parallel tool for automated EST analysis and database creation, with a data mining web interface and microarra
Background: Expressed sequence tag (EST) collections are composed of a high number of single-pass, redundant, partial sequences, which need to be processed, clustered, and annotat...
Javier Forment, Francisco Gilabert Villamón...
BMCBI
2008
79views more  BMCBI 2008»
13 years 10 months ago
In silico docking of urokinase plasminogen activator and integrins
Background: Urokinase, its receptor and the integrins are functionally associated and involved in regulation of cell signaling, migration, adhesion and proliferation. No structura...
Bernard Degryse, Juan Fernández-Recio, Vale...
BMCBI
2006
174views more  BMCBI 2006»
13 years 10 months ago
CARAT: A novel method for allelic detection of DNA copy number changes using high density oligonucleotide arrays
Background: DNA copy number alterations are one of the main characteristics of the cancer cell karyotype and can contribute to the complex phenotype of these cells. These alterati...
Jing Huang, Wen Wei, Joyce Chen, Jane Zhang, Guoyi...
BMCBI
2006
130views more  BMCBI 2006»
13 years 10 months ago
Docking protein domains in contact space
Background: Many biological processes involve the physical interaction between protein domains. Understanding these functional associations requires knowledge of the molecular str...
Stefano Lise, Alice Walker-Taylor, David T. Jones