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RECOMB
2010
Springer
14 years 1 months ago
SubMAP: Aligning Metabolic Pathways with Subnetwork Mappings
Abstract. We consider the problem of aligning two metabolic pathways. Unlike traditional approaches, we do not restrict the alignment to one-to-one mappings between the molecules o...
Ferhat Ay, Tamer Kahveci
NIPS
2007
13 years 10 months ago
Fixing Max-Product: Convergent Message Passing Algorithms for MAP LP-Relaxations
We present a novel message passing algorithm for approximating the MAP problem in graphical models. The algorithm is similar in structure to max-product but unlike max-product it ...
Amir Globerson, Tommi Jaakkola
SIAMCOMP
2000
118views more  SIAMCOMP 2000»
13 years 8 months ago
Constructive, Deterministic Implementation of Shared Memory on Meshes
This paper describes a scheme to implement a shared address space of size m on an n-node mesh, with m polynomial in n, where each mesh node hosts a processor and a memory module. A...
Andrea Pietracaprina, Geppino Pucci, Jop F. Sibeyn
CORR
2010
Springer
141views Education» more  CORR 2010»
13 years 7 months ago
Popularity at Minimum Cost
We consider an extension of the popular matching problem in this paper. The input to the popular matching problem is a bipartite graph G = (A ∪ B, E), where A is a set of people,...
Telikepalli Kavitha, Meghana Nasre, Prajakta Nimbh...
SODA
2012
ACM
170views Algorithms» more  SODA 2012»
11 years 11 months ago
Compression via matroids: a randomized polynomial kernel for odd cycle transversal
The Odd Cycle Transversal problem (OCT) asks whether a given graph can be made bipartite by deleting at most k of its vertices. In a breakthrough result Reed, Smith, and Vetta (Op...
Stefan Kratsch, Magnus Wahlström