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DNA
2004
Springer
157views Bioinformatics» more  DNA 2004»
14 years 4 months ago
Bond-Free Languages: Formalizations, Maximality and Construction Methods
The problem of negative design of DNA languages is addressed, that is, properties and construction methods of large sets of words that prevent undesired bonds when used in DNA com...
Lila Kari, Stavros Konstantinidis, Petr Sosí...
NC
2007
112views Neural Networks» more  NC 2007»
13 years 10 months ago
Bond-free DNA language classes
Michael Domaratzki
DNA
2006
Springer
14 years 2 months ago
Hairpin Structures Defined by DNA Trajectories
We examine scattered hairpins, which are structures formed when a single strand of nucleotides folds into a partially hybridized stem and a loop. To specify different classes of h...
Michael Domaratzki
DLT
2006
14 years 11 days ago
Closure of Language Classes Under Bounded Duplication
Duplication is an operation generating a language from a single word by iterated application of rewriting rules u uu on factors. We extend this operation to entire languages and i...
Masami Ito, Peter Leupold, Kayoko Shikishima-Tsuji
DNA
2009
Springer
194views Bioinformatics» more  DNA 2009»
14 years 2 months ago
A Domain-Specific Language for Programming in the Tile Assembly Model
We introduce a domain-specific language (DSL) for creating sets of tile types for simulations bstract Tile Assembly Model. The language defines objects known as tile templates, wh...
David Doty, Matthew J. Patitz