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» Boosting margin based distance functions for clustering
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BMCBI
2006
164views more  BMCBI 2006»
13 years 8 months ago
Evaluation of clustering algorithms for gene expression data
Background: Cluster analysis is an integral part of high dimensional data analysis. In the context of large scale gene expression data, a filtered set of genes are grouped togethe...
Susmita Datta, Somnath Datta
SDM
2004
SIAM
212views Data Mining» more  SDM 2004»
13 years 10 months ago
Clustering with Bregman Divergences
A wide variety of distortion functions, such as squared Euclidean distance, Mahalanobis distance, Itakura-Saito distance and relative entropy, have been used for clustering. In th...
Arindam Banerjee, Srujana Merugu, Inderjit S. Dhil...
ICML
2005
IEEE
14 years 9 months ago
Semi-supervised graph clustering: a kernel approach
Semi-supervised clustering algorithms aim to improve clustering results using limited supervision. The supervision is generally given as pairwise constraints; such constraints are...
Brian Kulis, Sugato Basu, Inderjit S. Dhillon, Ray...
BMCBI
2010
94views more  BMCBI 2010»
13 years 8 months ago
A comparative study of conservation and variation scores
Background: Conservation and variation scores are used when evaluating sites in a multiple sequence alignment, in order to identify residues critical for structure or function. A ...
Fredrik Johansson, Hiroyuki Toh
BIBM
2007
IEEE
137views Bioinformatics» more  BIBM 2007»
14 years 3 months ago
A Multi-metric Similarity Based Analysis of Microarray Data
Clustering has been shown to be effective in analyzing functional relationships of genes. However, no single clustering method with single distance metric is capable of capturing ...
Fatih Altiparmak, Selnur Erdal, Ozgur Ozturk, Haka...