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» Bounded Hairpin Completion
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LATA
2009
Springer
14 years 2 months ago
Bounded Hairpin Completion
We consider a restricted variant of the hairpin completion called bounded hairpin completion. The hairpin completion is a formal operation inspired from biochemistry. Applied to a ...
Masami Ito, Peter Leupold, Victor Mitrana
SOFSEM
2012
Springer
12 years 3 months ago
Iterated Hairpin Completions of Non-crossing Words
Abstract. Iterated hairpin completion is an operation on formal languages that is inspired by the hairpin formation in DNA biochemistry. Iterated hairpin completion of a word (or m...
Lila Kari, Steffen Kopecki, Shinnosuke Seki
CORR
2011
Springer
193views Education» more  CORR 2011»
13 years 2 months ago
On the regularity of iterated hairpin completion of a single word
Hairpin completion is an abstract operation modeling a DNA biooperation which receives as input a DNA strand w = xαyα, and outputs w = xαy¯αx, where x denotes the Watson-Cric...
Lila Kari, Steffen Kopecki, Shinnosuke Seki
CORR
2010
Springer
78views Education» more  CORR 2010»
13 years 7 months ago
On the Iterated Hairpin Completion
The hairpin completion is a natural operation on formal languages which has been inspired by biochemistry and DNA-computing. In this paper we solve two problems which were posed f...
Steffen Kopecki
CSB
2005
IEEE
140views Bioinformatics» more  CSB 2005»
14 years 1 months ago
TPR Packing Analysis and 3D Modeling for the HAT Domain of Human Crooked Neck Protein
Human crooked neck protein (hcrn) containing 17 HAT or TPR repeats plays a role in pre-mRNA processing. Conserved residues in the TPR consensus sequence of 34 aa were found at hel...
Zhenglin Hou, Cunxi Wang, Odd-Arne Olsen