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» Bounds for parametric sequence comparison
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BMCBI
2008
113views more  BMCBI 2008»
13 years 7 months ago
Investigating selection on viruses: a statistical alignment approach
Background: Two problems complicate the study of selection in viral genomes: Firstly, the presence of genes in overlapping reading frames implies that selection in one reading fra...
Saskia de Groot, Thomas Mailund, Gerton Lunter, Jo...
BMCBI
2006
135views more  BMCBI 2006»
13 years 7 months ago
TF Target Mapper: A BLAST search tool for the identification of Transcription Factor target genes
Background: In the current era of high throughput genomics a major challenge is the genome-wide identification of target genes for specific transcription factors. Chromatin immuno...
Sebastiaan Horsman, Michael J. Moorhouse, Victor C...
JOC
2008
92views more  JOC 2008»
13 years 7 months ago
Cryptanalysis of an E0-like Combiner with Memory
In this paper, we study an E0-like combiner with memory as the keystream generator. First, we formulate a systematic and simple method to compute correlations of the FSM output seq...
Yi Lu 0002, Serge Vaudenay
TSP
2010
13 years 2 months ago
Noisy data and impulse response estimation
Abstract--This paper investigates the impulse response estimation of linear time-invariant (LTI) systems when only noisy finitelength input-output data of the system is available. ...
Soosan Beheshti, Munther A. Dahleh
IMSCCS
2006
IEEE
14 years 1 months ago
Combining Comparative Genomics with de novo Motif Discovery to Identify Human Transcription Factor DNA-Binding Motifs
Background: As more and more genomes are sequenced, comparative genomics approaches provide a methodology for identifying conserved regulatory elements that may be involved in gen...
Linyong Mao, W. Jim Zheng