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BMCBI
2006
45views more  BMCBI 2006»
13 years 7 months ago
A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB
Background: Sharing of microarray data within the research community has been greatly facilitated by the development of the disclosure and communication standards MIAME and MAGEML...
Tim F. Rayner, Philippe Rocca-Serra, Paul T. Spell...
BMCBI
2006
128views more  BMCBI 2006»
13 years 7 months ago
Comparative assessment of performance and genome dependence among phylogenetic profiling methods
Background: The rapidly increasing speed with which genome sequence data can be generated will be accompanied by an exponential increase in the number of sequenced eukaryotes. Wit...
Evan S. Snitkin, Adam M. Gustafson, Joseph C. Mell...
JAR
2006
236views more  JAR 2006»
13 years 7 months ago
Deciding Boolean Algebra with Presburger Arithmetic
We describe an algorithm for deciding the first-order multisorted theory BAPA, which combines 1) Boolean algebras of sets of uninterpreted elements (BA) and 2) Presburger arithmeti...
Viktor Kuncak, Huu Hai Nguyen, Martin C. Rinard
NAR
2008
204views more  NAR 2008»
13 years 7 months ago
ppdb: a plant promoter database
ppdb (http://www.ppdb.gene.nagoya-u.ac.jp) is a plant promoter database that provides promoter annotation of Arabidopsis and rice. The database contains information on promoter st...
Yoshiharu Y. Yamamoto, Junichi Obokata
BMCBI
2005
124views more  BMCBI 2005»
13 years 7 months ago
Evaluating concentration estimation errors in ELISA microarray experiments
Background: Enzyme-linked immunosorbent assay (ELISA) is a standard immunoassay to estimate a protein's concentration in a sample. Deploying ELISA in a microarray format perm...
Don Simone Daly, Amanda M. White, Susan M. Varnum,...