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» CBESW: Sequence Alignment on the Playstation 3
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BMCBI
2008
111views more  BMCBI 2008»
15 years 3 months ago
CBESW: Sequence Alignment on the Playstation 3
Background: The exponential growth of available biological data has caused bioinformatics to be rapidly moving towards a data-intensive, computational science. As a result, the co...
Adrianto Wirawan, Chee Keong Kwoh, Nim Tri Hieu, B...
158
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BIBE
2008
IEEE
142views Bioinformatics» more  BIBE 2008»
15 years 10 months ago
Optimizing performance, cost, and sensitivity in pairwise sequence search on a cluster of PlayStations
— The Smith-Waterman algorithm is a dynamic programming method for determining optimal local alignments between nucleotide or protein sequences. However, it suffers from quadrati...
Ashwin M. Aji, Wu-chun Feng