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» COPASI - a COmplex PAthway SImulator
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JCB
2006
144views more  JCB 2006»
13 years 7 months ago
Modeling Virus Self-Assembly Pathways: Avoiding Dynamics Using Geometric Constraint Decomposition
We develop a model for elucidating the assembly pathways by which an icosahedral viral shell forms from 60 identical constituent protein monomers. This poorly understood process a...
Meera Sitharam, Mavis Agbandje-Mckenna
BMCBI
2005
156views more  BMCBI 2005»
13 years 7 months ago
A new dynamical layout algorithm for complex biochemical reaction networks
Background: To study complex biochemical reaction networks in living cells researchers more and more rely on databases and computational methods. In order to facilitate computatio...
Katja Wegner, Ursula Kummer
ENTCS
2008
99views more  ENTCS 2008»
13 years 7 months ago
Modelling Intracellular Fate of FGF Receptors With BioAmbients
In this paper we consider a model of different sorting of receptors for Fibroblast Growth Factor via the endocytotic pathway. In order to accurately model the relocation in the di...
Steffen van Bakel, Ikra Khan, Maria Grazia Vigliot...
ESANN
2003
13 years 8 months ago
RetinotopicNET: An Efficient Simulator for Retinotopic Visual Architectures
: -RetinotopicNET is an efficient simulator for neural networks with retinotopic-like receptive fields. The system has two main characteristics: it is event-driven and it takes adv...
Raul Cristian Muresan
IEAAIE
2004
Springer
14 years 23 days ago
Cell Modeling Using Agent-Based Formalisms
The systems biology community is building increasingly complex models and simulations of cells and other biological entities. This community is beginning to look at alternatives t...
Ken Webb, Tony White