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» Cache-Oblivious Dynamic Programming for Bioinformatics
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CF
2009
ACM
14 years 1 months ago
Quantitative analysis of sequence alignment applications on multiprocessor architectures
The exponential growth of databases that contains biological information (such as protein and DNA data) demands great efforts to improve the performance of computational platforms...
Friman Sánchez, Alex Ramírez, Mateo ...
INFOSCALE
2006
ACM
14 years 1 months ago
Scalable hardware accelerator for comparing DNA and protein sequences
Abstract— Comparing genetic sequences is a well-known problem in bioinformatics. Newly determined sequences are being compared to known sequences stored in databases in order to ...
Philippe Faes, Bram Minnaert, Mark Christiaens, Er...
ECML
2007
Springer
13 years 9 months ago
Sequence Labeling with Reinforcement Learning and Ranking Algorithms
Many problems in areas such as Natural Language Processing, Information Retrieval, or Bioinformatic involve the generic task of sequence labeling. In many cases, the aim is to assi...
Francis Maes, Ludovic Denoyer, Patrick Gallinari
EUROPAR
2010
Springer
13 years 8 months ago
Thread Owned Block Cache: Managing Latency in Many-Core Architecture
Abstract. Shared last level cache is crucial to performance. However, multithread program model incurs serious contention in shared cache. In this paper, to reduce average cache ac...
Fenglong Song, Zhiyong Liu, Dongrui Fan, Hao Zhang...
BMCBI
2010
135views more  BMCBI 2010»
13 years 7 months ago
Integration and visualization of systems biology data in context of the genome
Background: High-density tiling arrays and new sequencing technologies are generating rapidly increasing volumes of transcriptome and protein-DNA interaction data. Visualization a...
J. Christopher Bare, Tie Koide, David J. Reiss, Da...