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BMCBI
2010
155views more  BMCBI 2010»
13 years 5 months ago
BrEPS: a flexible and automatic protocol to compute enzyme-specific sequence profiles for functional annotation
Background: Models for the simulation of metabolic networks require the accurate prediction of enzyme function. Based on a genomic sequence, enzymatic functions of gene products a...
Constantin Bannert, A. Welfle, C. aus dem Spring, ...
BMCBI
2010
143views more  BMCBI 2010»
13 years 5 months ago
A genome alignment algorithm based on compression
Background: Traditional genome alignment methods consider sequence alignment as a variation of the string edit distance problem, and perform alignment by matching characters of th...
Minh Duc Cao, Trevor I. Dix, Lloyd Allison
ECEASST
2010
13 years 5 months ago
Safe Integration of Annotated Components in Open Source Projects
: The decision of using existing software components versus building from scratch custom software is one of the most complex and important choices of the entire development/integra...
Sergio Areias, Daniela Carneiro da Cruz, Pedro Ran...
FAC
2010
121views more  FAC 2010»
13 years 5 months ago
Blaming the client: on data refinement in the presence of pointers
Data refinement is a common approach to reasoning about programs, based on establishing that te program indeed satisfies all the required properties imposed by an intended abstract...
Ivana Filipovic, Peter W. O'Hearn, Noah Torp-Smith...
BMCBI
2011
13 years 2 months ago
The dChip survival analysis module for microarray data
Background: Genome-wide expression signatures are emerging as potential marker for overall survival and disease recurrence risk as evidenced by recent commercialization of gene ex...
Samir B. Amin, Parantu K. Shah, Aimin Yan, Sophia ...
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