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BMCBI
2010
127views more  BMCBI 2010»
13 years 9 months ago
Deriving enzymatic and taxonomic signatures of metagenomes from short read data
Background: We propose a method for deriving enzymatic signatures from short read metagenomic data of unknown species. The short read data are converted to six pseudo-peptide cand...
Uri Weingart, Erez Persi, Uri Gophna, David Horn
BMCBI
2006
166views more  BMCBI 2006»
13 years 9 months ago
Extraction of phylogenetic network modules from the metabolic network
Background: In bio-systems, genes, proteins and compounds are related to each other, thus forming complex networks. Although each organism has its individual network, some organis...
Takuji Yamada, Minoru Kanehisa, Susumu Goto
CORR
2006
Springer
120views Education» more  CORR 2006»
13 years 9 months ago
Termination orders for 3-dimensional rewriting
Abstract: This paper studies 3-polygraphs as a framework for rewriting on two-dimensional words. A translation of term rewriting systems into 3-polygraphs with explicit resource ma...
Yves Guiraud
MLQ
2007
90views more  MLQ 2007»
13 years 8 months ago
Kripke submodels and universal sentences
We define two notions for intuitionistic predicate logic: that of a submodel of a Kripke model, and that of a universal sentence. We then prove a corresponding preservation theor...
Ben Ellison, Jonathan Fleischmann, Dan McGinn, Wim...
PRL
2007
128views more  PRL 2007»
13 years 8 months ago
Automatic recognition of biological particles in microscopic images
A simple and general-purpose system to recognize biological particles is presented. It is composed of four stages. First (if necessary) promising locations in the image are detect...
Marc'Aurelio Ranzato, P. E. Taylor, J. M. House, R...