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» Cell Modeling Using Agent-Based Formalisms
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TCBB
2010
89views more  TCBB 2010»
13 years 7 months ago
Model Composition for Macromolecular Regulatory Networks
—Models of regulatory networks become more difficult to construct and understand as they grow in size and complexity. Large models are usually built up from smaller models, repre...
Ranjit Randhawa, Clifford A. Shaffer, John J. Tyso...
FM
2009
Springer
138views Formal Methods» more  FM 2009»
14 years 3 months ago
What Can Formal Methods Bring to Systems Biology?
This position paper argues that the operational modelling approaches from the formal methods community can be applied fruitfully within the systems biology domain. The results can ...
Nicola Bonzanni, K. Anton Feenstra, Wan Fokkink, E...
ATAL
2008
Springer
13 years 10 months ago
Towards verifying compliance in agent-based web service compositions
We explore the problem of specification and verification of compliance in agent based Web service compositions. We use the formalism of temporal-epistemic logic suitably extended ...
Alessio Lomuscio, Hongyang Qu, Monika Solanki
CMSB
2011
Springer
12 years 8 months ago
Coloured stochastic multilevel multiset rewriting
From the phosphorylation state of a molecule to the volume of a cell, parameters are ubiquitous in systems biology. At the same time, most models involve static or dynamic compart...
Nicolas Oury, Gordon D. Plotkin
SYNASC
2005
IEEE
84views Algorithms» more  SYNASC 2005»
14 years 2 months ago
Membrane Computing as a Framework for Modeling Economic Processes
Abstract. This paper is a first step towards a systematic evaluation of the possibilities to use membrane computing as a modeling framework for economics. Membrane computing is a ...
Gheorghe Paun, Radu A. Paun