Modelling activities in molecular biology face the difficulty of prediction to link molecular knowledge with cell phenotypes. Even when the interaction graph between molecules is k...
DEVS is a Modeling and Simulation formalism that has been used to study the dynamics of discrete event systems. Cell-DEVS is a DEVS-based formalism that defines the cell space as ...
CD++ is an implementation of the Cell-DEVS formalism, which has been used to simulate various complex systems. In this study, we constructed a Cell-DEVS to simulate the dynamics of...
The use of process calculi to represent biological systems has led to the design of different formalisms such as brane calculi and κ-calculus. Both have proved to be useful to m...
Interactions between synaptic vesicles and synapsin in a presynaptic nerve terminal were modeled using the CellDEVS formalism. Vesicles and synapsins move randomly within the pres...
Rhys Goldstein, Gabriel A. Wainer, James J. Cheeth...