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» Closed Set Mining of Biological Data
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BMCBI
2011
12 years 11 months ago
MINE: Module Identification in NEtworks
Background: Graphical models of network associations are useful for both visualizing and integrating multiple types of association data. Identifying modules, or groups of function...
Kahn Rhrissorrakrai, Kristin C. Gunsalus
BICOB
2010
Springer
13 years 7 months ago
Integrative Biomarker Discovery for Breast Cancer Metastasis from Gene Expression and Protein Interaction Data Using Error-toler
Biomarker discovery for complex diseases is a challenging problem. Most of the existing approaches identify individual genes as disease markers, thereby missing the interactions a...
Rohit Gupta, Smita Agrawal, Navneet Rao, Ze Tian, ...
NIPS
2008
13 years 9 months ago
Spectral Clustering with Perturbed Data
Spectral clustering is useful for a wide-ranging set of applications in areas such as biological data analysis, image processing and data mining. However, the computational and/or...
Ling Huang, Donghui Yan, Michael I. Jordan, Nina T...
PAKDD
2007
ACM
128views Data Mining» more  PAKDD 2007»
14 years 1 months ago
Selecting a Reduced Set for Building Sparse Support Vector Regression in the Primal
Recent work shows that Support vector machines (SVMs) can be solved efficiently in the primal. This paper follows this line of research and shows how to build sparse support vector...
Liefeng Bo, Ling Wang, Licheng Jiao
BMCBI
2006
183views more  BMCBI 2006»
13 years 7 months ago
Mining gene expression data by interpreting principal components
Background: There are many methods for analyzing microarray data that group together genes having similar patterns of expression over all conditions tested. However, in many insta...
Joseph C. Roden, Brandon W. King, Diane Trout, Ali...