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» Clustered Sequence Representation for Fast Homology Search
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CSR
2006
Springer
14 years 3 days ago
Fast Motif Search in Protein Sequence Databases
Regular expression pattern matching is widely used in computational biology. Searching through a database of sequences for a motif (a simple regular expression), or its variations...
Elena Zheleva, Abdullah N. Arslan
ADC
2007
Springer
183views Database» more  ADC 2007»
14 years 13 days ago
Efficient Similarity Search by Summarization in Large Video Database
With the explosion of video data, video processing technologies have advanced quickly and been applied into many fields, such as advertisements, medical etc.. To fast search these...
Xiangmin Zhou, Xiaofang Zhou, Heng Tao Shen
BMCBI
2005
132views more  BMCBI 2005»
13 years 8 months ago
Kalign - an accurate and fast multiple sequence alignment algorithm
Background: The alignment of multiple protein sequences is a fundamental step in the analysis of biological data. It has traditionally been applied to analyzing protein families f...
Timo Lassmann, Erik L. L. Sonnhammer
ICSM
2007
IEEE
14 years 2 months ago
A Maintainable Software Architecture for Fast and Modular Bioinformatics Sequence Search
Bioinformaticists use the Basic Local Alignment Search Tool (BLAST) to characterize an unknown sequence by comparing it against a database of known sequences, thus detecting evolu...
Jeremy S. Archuleta, Eli Tilevich, Wu-chun Feng
SCFBM
2008
131views more  SCFBM 2008»
13 years 7 months ago
FASH: A web application for nucleotides sequence search
: FASH (Fourier Alignment Sequence Heuristics) is a web application, based on the Fast Fourier Transform, for finding remote homologs within a long nucleic acid sequence. Given a ...
Isana Veksler-Lublinsky, Danny Barash, Chai Avisar...