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» Clustering Genes Using Heterogeneous Data Sources
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NAR
2006
88views more  NAR 2006»
13 years 9 months ago
PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes
We have developed a web tool, PupaSuite, for the selection of single nucleotide polymorphisms (SNPs) with potential phenotypic effect, specifically oriented to help in the design ...
Lucía Conde, Juan M. Vaquerizas, Hern&aacut...
BMCBI
2008
128views more  BMCBI 2008»
13 years 10 months ago
Efficient computation of absent words in genomic sequences
Background: Analysis of sequence composition is a routine task in genome research. Organisms are characterized by their base composition, dinucleotide relative abundance, codon us...
Julia Herold, Stefan Kurtz, Robert Giegerich
WSOM
2009
Springer
14 years 4 months ago
Analytic Comparison of Self-Organising Maps
Abstract. SOMs have proven to be a very powerful tool for data analysis. However, comparing multiple SOMs trained on the same data set using different parameters or initialisation...
Rudolf Mayer, Robert Neumayer, Doris Baum, Andreas...
RECOMB
2008
Springer
14 years 10 months ago
CompostBin: A DNA Composition-Based Algorithm for Binning Environmental Shotgun Reads
A major hindrance to studies of microbial diversity has been that the vast majority of microbes cannot be cultured in the laboratory and thus are not amenable to traditional method...
Sourav Chatterji, Ichitaro Yamazaki, Zhaojun Bai, ...
BMCBI
2008
121views more  BMCBI 2008»
13 years 10 months ago
iRefIndex: A consolidated protein interaction database with provenance
Background: Interaction data for a given protein may be spread across multiple databases. We set out to create a unifying index that would facilitate searching for these data and ...
Sabry Razick, George Magklaras, Ian M. Donaldson