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BMCBI
2010
156views more  BMCBI 2010»
13 years 7 months ago
Protein complex prediction via verifying and reconstructing the topology of domain-domain interactions
Background: High-throughput methods for detecting protein-protein interactions enable us to obtain large interaction networks, and also allow us to computationally identify the as...
Yosuke Ozawa, Rintaro Saito, Shigeo Fujimori, Hisa...
BMCBI
2008
130views more  BMCBI 2008»
13 years 7 months ago
A novel series of compositionally biased substitution matrices for comparing Plasmodium proteins
Background: The most common substitution matrices currently used (BLOSUM and PAM) are based on protein sequences with average amino acid distributions, thus they do not represent ...
Kevin Brick, Elisabetta Pizzi
GBRPR
2007
Springer
13 years 11 months ago
An Efficient Ontology-Based Expert Peering System
Abstract. This paper proposes an expert peering system for information exchange. Our objective is to develop a real-time search engine for an online community where users can ask e...
Tansu Alpcan, Christian Bauckhage, Sachin Agarwal
BMCBI
2008
200views more  BMCBI 2008»
13 years 7 months ago
Defining functional distances over Gene Ontology
Background: A fundamental problem when trying to define the functional relationships between proteins is the difficulty in quantifying functional similarities, even when well-stru...
Angela del Pozo, Florencio Pazos, Alfonso Valencia
JSA
2000
115views more  JSA 2000»
13 years 7 months ago
Scheduling optimization through iterative refinement
Scheduling DAGs with communication times is the theoretical basis for achieving efficient parallelism on distributed memory systems. We generalize Graham's task-level in a ma...
Mayez A. Al-Mouhamed, Adel Al-Massarani