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COMAD
2009
13 years 10 months ago
Graph Clustering for Keyword Search
Keyword search on data represented as graphs, is receiving lot of attention in recent years. Initial versions of keyword search systems assumed that the graph is memory resident. ...
Rose Catherine K., S. Sudarshan
WWW
2010
ACM
14 years 3 months ago
The paths more taken: matching DOM trees to search logs for accurate webpage clustering
An unsupervised clustering of the webpages on a website is a primary requirement for most wrapper induction and automated data extraction methods. Since page content can vary dras...
Deepayan Chakrabarti, Rupesh R. Mehta
BMCBI
2004
150views more  BMCBI 2004»
13 years 8 months ago
SS-Wrapper: a package of wrapper applications for similarity searches on Linux clusters
Background: Large-scale sequence comparison is a powerful tool for biological inference in modern molecular biology. Comparing new sequences to those in annotated databases is a u...
Chunlin Wang, Elliot J. Lefkowitz
CLUSTER
2003
IEEE
14 years 2 months ago
A Case Study of Parallel I/O for Biological Sequence Search on Linux Clusters
In this paper we analyze the I/O access patterns of a widely-used biological sequence search tool and implement two variations that employ parallel-I/O for data access based on PV...
Yifeng Zhu, Hong Jiang, Xiao Qin, David R. Swanson
BIBE
2008
IEEE
142views Bioinformatics» more  BIBE 2008»
14 years 3 months ago
Optimizing performance, cost, and sensitivity in pairwise sequence search on a cluster of PlayStations
— The Smith-Waterman algorithm is a dynamic programming method for determining optimal local alignments between nucleotide or protein sequences. However, it suffers from quadrati...
Ashwin M. Aji, Wu-chun Feng