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CLUSTER
2008
IEEE
13 years 9 months ago
Efficient one-copy MPI shared memory communication in Virtual Machines
Efficient intra-node shared memory communication is important for High Performance Computing (HPC), especially with the emergence of multi-core architectures. As clusters continue ...
Wei Huang, Matthew J. Koop, Dhabaleswar K. Panda
BMCBI
2008
87views more  BMCBI 2008»
13 years 7 months ago
Protein structure search and local structure characterization
Background: Structural similarities among proteins can provide valuable insight into their functional mechanisms and relationships. As the number of available three-dimensional (3...
Shih-Yen Ku, Yuh-Jyh Hu
CP
2005
Springer
14 years 28 days ago
Multi-point Constructive Search
Abstract. Multi-Point Constructive Search maintains a small set of “elite solutions” that are used to heuristically guide constructive search through periodically restarting se...
J. Christopher Beck
ICPP
2009
IEEE
14 years 2 months ago
Accelerating Checkpoint Operation by Node-Level Write Aggregation on Multicore Systems
—Clusters and applications continue to grow in size while their mean time between failure (MTBF) is getting smaller. Checkpoint/Restart is becoming increasingly important for lar...
Xiangyong Ouyang, Karthik Gopalakrishnan, Dhabales...
WSC
1998
13 years 8 months ago
Parallel Implementation of a Molecular Dynamics Simulation Program
We have taken a NIST molecular dynamics simulation program (md3), which was configured as a single sequential process running on a CRAY C90 vector supercomputer, and parallelized ...
Alan Mink, Christophe Bailly