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» Clustering techniques for protein surfaces
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BMCBI
2008
131views more  BMCBI 2008»
13 years 8 months ago
Modifying the DPClus algorithm for identifying protein complexes based on new topological structures
Background: Identification of protein complexes is crucial for understanding principles of cellular organization and functions. As the size of protein-protein interaction set incr...
Min Li, Jianer Chen, Jianxin Wang, Bin Hu, Gang Ch...
CP
2005
Springer
14 years 1 months ago
Applying Constraint Programming to Rigid Body Protein Docking
In this paper we show how Constraint Programming (CP) techniques can improve the efficiency and applicability of grid-based algorithms for optimising surface contact between comple...
Ludwig Krippahl, Pedro Barahona
ICANNGA
2007
Springer
128views Algorithms» more  ICANNGA 2007»
14 years 2 months ago
A Demonstration of Clustering in Protein Contact Maps for Alpha Helix Pairs
Abstract. The purpose of this work is to demonstrate that it is possible to cluster contact maps for pairs of alpha helices such that each of the clusters corresponds to a group of...
Robert Fraser, Janice I. Glasgow
BMCBI
2008
138views more  BMCBI 2008»
13 years 8 months ago
CASCADE: a novel quasi all paths-based network analysis algorithm for clustering biological interactions
Background: Quantitative characterization of the topological characteristics of protein-protein interaction (PPI) networks can enable the elucidation of biological functional modu...
Woochang Hwang, Young-Rae Cho, Aidong Zhang, Mural...
IPPS
2006
IEEE
14 years 1 months ago
A method to improve structural modeling based on conserved domain clusters
—Homology modeling requires an accurate alignment between a query sequence and its homologs with known three-dimensional (3D) information. Current structural modeling techniques ...
Fa Zhang, Lin Xu, Bo Yuan