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BMCBI
2005
137views more  BMCBI 2005»
13 years 7 months ago
ArrayQuest: a web resource for the analysis of DNA microarray data
Background: Numerous microarray analysis programs have been created through the efforts of Open Source software development projects. Providing browser-based interfaces that allow...
Gary L. Argraves, Saurin D. Jani, Jeremy L. Barth,...
BMCBI
2005
144views more  BMCBI 2005»
13 years 7 months ago
Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in
Background: Comparison of data produced on different microarray platforms often shows surprising discordance. It is not clear whether this discrepancy is caused by noisy data or b...
Scott L. Carter, Aron C. Eklund, Brigham H. Mecham...
BMCBI
2005
100views more  BMCBI 2005»
13 years 7 months ago
EvDTree: structure-dependent substitution profiles based on decision tree classification of 3D environments
Background: Structure-dependent substitution matrices increase the accuracy of sequence alignments when the 3D structure of one sequence is known, and are successful e.g. in fold ...
Jean-Christophe Gelly, Laurent Chiche, Jér&...
CAGD
2005
113views more  CAGD 2005»
13 years 7 months ago
Mesh scissoring with minima rule and part salience
This paper presents an intelligent scissoring operator for meshes. Unlike common approaches that segment a mesh using clustering schemes, we introduce a method that concentrates o...
Yunjin Lee, Seungyong Lee, Ariel Shamir, Daniel Co...
BMCBI
2004
94views more  BMCBI 2004»
13 years 7 months ago
Caryoscope: An Open Source Java application for viewing microarray data in a genomic context
Background: Microarray-based comparative genome hybridization experiments generate data that can be mapped onto the genome. These data are interpreted more easily when represented...
Ihab A. B. Awad, Christian A. Rees, Tina Hernandez...