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» Clustering the annotation space of proteins
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BMCBI
2008
146views more  BMCBI 2008»
13 years 9 months ago
Can molecular dynamics simulations help in discriminating correct from erroneous protein 3D models?
Background: Recent approaches for predicting the three-dimensional (3D) structure of proteins such as de novo or fold recognition methods mostly rely on simplified energy potentia...
Jean-François Taly, Antoine Marin, Jean-Fra...
ECCV
2010
Springer
14 years 2 months ago
Detecting People Using Mutually Consistent Poselet Activations
Bourdev and Malik (ICCV 09) introduced a new notion of parts, poselets, constructed to be tightly clustered both in the configuration space of keypoints, as well as in the appeara...
JBI
2004
171views Bioinformatics» more  JBI 2004»
13 years 10 months ago
Consensus Clustering and Functional Interpretation of Gene Expression Data
Microarray analysis using clustering algorithms can suffer from lack of inter-method consistency in assigning related gene-expression profiles to clusters. Obtaining a consensus s...
Paul Kellam, Stephen Swift, Allan Tucker, Veronica...
NIPS
2008
13 years 10 months ago
Clusters and Coarse Partitions in LP Relaxations
We propose a new class of consistency constraints for Linear Programming (LP) relaxations for finding the most probable (MAP) configuration in graphical models. Usual cluster-base...
David Sontag, Amir Globerson, Tommi Jaakkola
BMCBI
2010
98views more  BMCBI 2010»
13 years 9 months ago
An optimized TOPS+ comparison method for enhanced TOPS models
nd: Although methods based on highly abstract descriptions of protein structures, such as VAST and TOPS, can perform very fast protein structure comparison, the results can lack a...
Mallika Veeramalai, David Gilbert, Gabriel Valient...