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» Clustering the annotation space of proteins
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BMCBI
2010
121views more  BMCBI 2010»
13 years 6 months ago
A grammar-based distance metric enables fast and accurate clustering of large sets of 16S sequences
Background: We propose a sequence clustering algorithm and compare the partition quality and execution time of the proposed algorithm with those of a popular existing algorithm. T...
David J. Russell, Samuel F. Way, Andrew K. Benson,...
BMCBI
2006
115views more  BMCBI 2006»
13 years 9 months ago
MitoRes: a resource of nuclear-encoded mitochondrial genes and their products in Metazoa
Background: Mitochondria are sub-cellular organelles that have a central role in energy production and in other metabolic pathways of all eukaryotic respiring cells. In the last f...
Domenico Catalano, Flavio Licciulli, Antonio Turi,...
ECML
2007
Springer
14 years 3 months ago
Conceptual Clustering Applied to Ontologies
Abstract. A clustering method is presented which can be applied to semantically annotated resources in the context of ontological knowledge bases. This method can be used to discov...
Floriana Esposito, Nicola Fanizzi, Claudia d'Amato
BMCBI
2010
154views more  BMCBI 2010»
13 years 9 months ago
Binary image representation of a ligand binding site: its application to efficient sampling of a conformational ensemble
Background: Modelling the ligand binding site of a protein is an important component of understanding proteinligand interactions and is being actively studied. Even if the side ch...
Edon Sung, Sangsoo Kim, Whanchul Shin
CLEF
2008
Springer
13 years 10 months ago
Using Visual Concepts and Fast Visual Diversity to Improve Image Retrieval
In this article, we focus our efforts (i) on the study of how to automatically extract and exploit visual concepts and (ii) on fast visual diversity. First, in the Visual Concept D...
Sabrina Tollari, Marcin Detyniecki, Ali Fakeri-Tab...