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» Clustering the annotation space of proteins
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BIBE
2008
IEEE
142views Bioinformatics» more  BIBE 2008»
14 years 2 months ago
Optimizing performance, cost, and sensitivity in pairwise sequence search on a cluster of PlayStations
— The Smith-Waterman algorithm is a dynamic programming method for determining optimal local alignments between nucleotide or protein sequences. However, it suffers from quadrati...
Ashwin M. Aji, Wu-chun Feng
ICMCS
2005
IEEE
91views Multimedia» more  ICMCS 2005»
14 years 1 months ago
An Intuitive Graphic Environment for Navigation and Classification of Multimedia Documents
In this work we propose an intuitive graphic framework for the effective visualization of MPEG-7 low-level features, in the context of classification and annotation of audio-visu...
Marco Campanella, Riccardo Leonardi, Pierangelo Mi...
BMCBI
2008
167views more  BMCBI 2008»
13 years 7 months ago
Expression profiles of switch-like genes accurately classify tissue and infectious disease phenotypes in model-based classificat
Background: Large-scale compilation of gene expression microarray datasets across diverse biological phenotypes provided a means of gathering a priori knowledge in the form of ide...
Michael Gormley, Aydin Tozeren
ICDM
2005
IEEE
188views Data Mining» more  ICDM 2005»
14 years 1 months ago
Hierarchy-Regularized Latent Semantic Indexing
Organizing textual documents into a hierarchical taxonomy is a common practice in knowledge management. Beside textual features, the hierarchical structure of directories reflect...
Yi Huang, Kai Yu, Matthias Schubert, Shipeng Yu, V...
BMCBI
2008
153views more  BMCBI 2008»
13 years 7 months ago
Version VI of the ESTree db: an improved tool for peach transcriptome analysis
Background: The ESTree database (db) is a collection of Prunus persica and Prunus dulcis EST sequences that in its current version encompasses 75,404 sequences from 3 almond and 1...
Barbara Lazzari, Andrea Caprera, Alberto Vecchiett...