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RECOMB
2008
Springer
14 years 7 months ago
Integrating Sequence and Topology for Efficient and Accurate Detection of Horizontal Gene Transfer
Abstract. One phylogeny-based approach to horizontal gene transfer (HGT) detection entails comparing the topology of a gene tree to that of the species tree, and using their differ...
Cuong Than, Guohua Jin, Luay Nakhleh
STOC
2007
ACM
111views Algorithms» more  STOC 2007»
14 years 7 months ago
Low-end uniform hardness vs. randomness tradeoffs for AM
In 1998, Impagliazzo and Wigderson [IW98] proved a hardness vs. randomness tradeoff for BPP in the uniform setting, which was subsequently extended to give optimal tradeoffs for t...
Ronen Shaltiel, Christopher Umans
STOC
2006
ACM
138views Algorithms» more  STOC 2006»
14 years 7 months ago
The PCP theorem by gap amplification
The PCP theorem [3, 2] says that every language in NP has a witness format that can be checked probabilistically by reading only a constant number of bits from the proof. The cele...
Irit Dinur
STOC
2004
ACM
157views Algorithms» more  STOC 2004»
14 years 7 months ago
Derandomizing homomorphism testing in general groups
The main result of this paper is a near-optimal derandomization of the affine homomorphism test of Blum, Luby and Rubinfeld (Journal of Computer and System Sciences, 1993). We sho...
Amir Shpilka, Avi Wigderson
OSDI
2008
ACM
14 years 7 months ago
R2: An Application-Level Kernel for Record and Replay
Library-based record and replay tools aim to reproduce an application's execution by recording the results of selected functions in a log and during replay returning the resu...
Zhenyu Guo, Xi Wang, Jian Tang, Xuezheng Liu, Zhil...