Background: The protein folding problem is a fundamental problems in computational molecular biology and biochemical physics. Various optimisation methods have been applied to for...
Background: Transcriptional gene regulation is one of the most important mechanisms in controlling many essential cellular processes, including cell development, cell-cycle contro...
Marc Bailly-Bechet, Alfredo Braunstein, Andrea Pag...
In this paper we present an algorithm for generating quadratic assignment problem (QAP) instances with known provably optimal solution. The flow matrix of such instances is constru...
This paper proposes an incremental approach for building solutions using evolutionary computation. It presents a simple evolutionary model called a Transition model in which parti...
Anne Defaweux, Tom Lenaerts, Jano I. van Hemert, J...
Abstract. In this paper, we use integer programming approach for solving a hard combinatorial optimization problem, namely protein threading. For this sequence-to-structure alignme...
Philippe Veber, Nicola Yanev, Rumen Andonov, Vince...