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» Combinatorial and computational aspects of graph packing and...
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RECOMB
2005
Springer
14 years 7 months ago
Rapid Protein Side-Chain Packing via Tree Decomposition
This paper proposes a novel tree decomposition based side-chain assignment algorithm, which can obtain the globally optimal solution of the side-chain packing problem very efficien...
Jinbo Xu
MP
2011
13 years 2 months ago
Statistical ranking and combinatorial Hodge theory
We propose a number of techniques for obtaining a global ranking from data that may be incomplete and imbalanced — characteristics that are almost universal to modern datasets co...
Xiaoye Jiang, Lek-Heng Lim, Yuan Yao, Yinyu Ye
CORR
2008
Springer
116views Education» more  CORR 2008»
13 years 7 months ago
Learning to rank with combinatorial Hodge theory
Abstract. We propose a number of techniques for learning a global ranking from data that may be incomplete and imbalanced -- characteristics that are almost universal to modern dat...
Xiaoye Jiang, Lek-Heng Lim, Yuan Yao, Yinyu Ye
FCT
2003
Springer
14 years 18 days ago
Graph Searching, Elimination Trees, and a Generalization of Bandwidth
The bandwidth minimization problem has a long history and a number of practical applications. In this paper we introduce a natural extension of bandwidth to partially ordered layo...
Fedor V. Fomin, Pinar Heggernes, Jan Arne Telle
CORR
2008
Springer
110views Education» more  CORR 2008»
13 years 7 months ago
Trimmed Moebius Inversion and Graphs of Bounded Degree
We study ways to expedite Yates's algorithm for computing the zeta and Moebius transforms of a function defined on the subset lattice. We develop a trimmed variant of Moebius ...
Andreas Björklund, Thore Husfeldt, Petteri Ka...