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» Combinatorics of Periods in Strings
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CPM
2005
Springer
109views Combinatorics» more  CPM 2005»
15 years 11 months ago
Using PQ Trees for Comparative Genomics
Permutations on strings representing gene clusters on genomes have been studied earlier in [18, 14, 3, 12, 17] and the idea of a maximal permutation pattern was introduced in [12]....
Gad M. Landau, Laxmi Parida, Oren Weimann
GECCO
2006
Springer
163views Optimization» more  GECCO 2006»
15 years 9 months ago
The quadratic multiple knapsack problem and three heuristic approaches to it
The quadratic multiple knapsack problem extends the quadratic knapsack problem with K knapsacks, each with its own capacity Ck. A greedy heuristic fills the knapsacks one at a tim...
Amanda Hiley, Bryant A. Julstrom
STOC
2005
ACM
147views Algorithms» more  STOC 2005»
16 years 6 months ago
Simulating independence: new constructions of condensers, ramsey graphs, dispersers, and extractors
We present new explicit constructions of deterministic randomness extractors, dispersers and related objects. We say that a distribution X on binary strings of length n is a -sour...
Boaz Barak, Guy Kindler, Ronen Shaltiel, Benny Sud...
CPM
2000
Springer
177views Combinatorics» more  CPM 2000»
15 years 10 months ago
Identifying and Filtering Near-Duplicate Documents
Abstract. The mathematical concept of document resemblance captures well the informal notion of syntactic similarity. The resemblance can be estimated using a fixed size “sketch...
Andrei Z. Broder
CPM
2006
Springer
125views Combinatorics» more  CPM 2006»
15 years 9 months ago
Geometric Suffix Tree: A New Index Structure for Protein 3-D Structures
Abstract. Protein structure analysis is one of the most important research issues in the post-genomic era, and faster and more accurate query data structures for such 3-D structure...
Tetsuo Shibuya