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» Combinatorics of RNA Secondary Structures
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SAC
2009
ACM
14 years 2 months ago
GTfold: a scalable multicore code for RNA secondary structure prediction
The prediction of the correct secondary structures of large RNAs is one of the unsolved challenges of computational molecular biology. Among the major obstacles is the fact that a...
Amrita Mathuriya, David A. Bader, Christine E. Hei...
ASAP
2008
IEEE
186views Hardware» more  ASAP 2008»
14 years 2 months ago
Accelerating Nussinov RNA secondary structure prediction with systolic arrays on FPGAs
RNA structure prediction, or folding, is a computeintensive task that lies at the core of several search applications in bioinformatics. We begin to address the need for high-thro...
Arpith C. Jacob, Jeremy Buhler, Roger D. Chamberla...
WABI
2009
Springer
200views Bioinformatics» more  WABI 2009»
14 years 2 months ago
K-Partite RNA Secondary Structures
Minghui Jiang, Pedro J. Tejada, Ramoni O. Lasisi, ...
ESCAPE
2007
Springer
251views Algorithms» more  ESCAPE 2007»
14 years 1 months ago
Extending the Hardness of RNA Secondary Structure Comparison
Guillaume Blin, Guillaume Fertin, Irena Rusu, Chri...
WABI
2007
Springer
14 years 1 months ago
HFold: RNA Pseudoknotted Secondary Structure Prediction Using Hierarchical Folding
Hosna Jabbari, Anne Condon, Ana Pop, Cristina Pop,...