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» Combinatorics of RNA Secondary Structures
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GCB
2008
Springer
174views Biometrics» more  GCB 2008»
13 years 8 months ago
Lightweight Comparison of RNAs based on Exact Sequence-structure Matches
: Specific functions of RNA molecules are often associated with different motifs in the RNA structure. The key feature that forms such an RNA motif is the combination of sequence ...
Steffen Heyne, Sebastian Will, Michael Beckstette,...
EVOW
2004
Springer
14 years 26 days ago
Two-Step Genetic Programming for Optimization of RNA Common-Structure
We present an algorithm for identifying putative non-coding RNA (ncRNA) using an RCSG (RNA Common-Structural Grammar) and show the effectiveness of the algorithm. The algorithm con...
Jin-Wu Nam, Je-Gun Joung, Y. S. Ahn, Byoung-Tak Zh...
CSB
2005
IEEE
119views Bioinformatics» more  CSB 2005»
14 years 1 months ago
Temperature and Mutation Switches in the Secondary Structure of Small RNAs
Conformational switching in the secondary structure of RNAs has recently attracted considerable attention, fostered by the discovery of ‘riboswitches’ in living organisms. The...
Assaf Avihoo, Danny Barash
NAR
2002
156views more  NAR 2002»
13 years 7 months ago
NCIR: a database of non-canonical interactions in known RNA structures
The secondary and tertiary structure of an RNA molecule typically includes a number of non-canonical base
Uma Nagaswamy, Maia Larios-Sanz, James Hury, Shaka...
CSB
2005
IEEE
114views Bioinformatics» more  CSB 2005»
14 years 1 months ago
Tree Decomposition Based Fast Search of RNA Structures Including Pseudoknots in Genomes
Searching genomes for RNA secondary structure with computational methods has become an important approach to the annotation of non-coding RNAs. However, due to the lack of effici...
Yinglei Song, Chunmei Liu, Russell L. Malmberg, Fa...