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» Combinatorics of RNA Secondary Structures
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ESA
2005
Springer
136views Algorithms» more  ESA 2005»
14 years 1 months ago
Approximating the 2-Interval Pattern Problem
We address the problem of approximating the 2-Interval Pattern problem over its various models and restrictions. This problem, which is motivated by RNA secondary structure predict...
Maxime Crochemore, Danny Hermelin, Gad M. Landau, ...
COMBINATORICS
2000
72views more  COMBINATORICS 2000»
13 years 7 months ago
Tournament Sequences and Meeussen Sequences
A tournament sequence is an increasing sequence of positive integers (t1, t2, . . .) such that t1 = 1 and ti+1 2ti. A Meeussen sequence is an increasing sequence of positive inte...
Matthew Cook, Michael Kleber
BMCBI
2010
93views more  BMCBI 2010»
13 years 7 months ago
Hybridization thermodynamics of NimbleGen Microarrays
Background: While microarrays are the predominant method for gene expression profiling, probe signal variation is still an area of active research. Probe signal is sequence depend...
Ulrike Mückstein, Germán G. Leparc, Al...
BMCBI
2005
99views more  BMCBI 2005»
13 years 7 months ago
Effective ambiguity checking in biosequence analysis
Background: Ambiguity is a problem in biosequence analysis that arises in various analysis tasks solved via dynamic programming, and in particular, in the modeling of families of ...
Janina Reeder, Peter Steffen, Robert Giegerich
JCC
2011
87views more  JCC 2011»
13 years 2 months ago
NUPACK: Analysis and design of nucleic acid systems
: The Nucleic Acid Package (NUPACK) is a growing software suite for the analysis and design of nucleic acid systems. The NUPACK web server (http://www.nupack.org) currently enables...
Joseph N. Zadeh, Conrad Steenberg, Justin S. Bois,...