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» Compactly representing parallel program executions
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BCB
2010
156views Bioinformatics» more  BCB 2010»
13 years 3 months ago
Accelerating HMMER on GPUs by implementing hybrid data and task parallelism
Many biologically motivated problems are expressed as dynamic programming recurrences and are difficult to parallelize due to the intrinsic data dependencies in their algorithms. ...
Narayan Ganesan, Roger D. Chamberlain, Jeremy Buhl...
CCGRID
2004
IEEE
14 years 9 days ago
Skeleton based performance prediction on shared networks
The performance skeleton of an application is a short running program whose performance in any scenario reflects the performance of the application it represents. Such a skeleton ...
Sukhdeep Sodhi, Jaspal Subhlok
CLUSTER
2008
IEEE
13 years 8 months ago
Performance prediction with skeletons
The performance skeleton of an application is a short running program whose performance in any scenario reflects the performance of the application it represents. Specifically, th...
Sukhdeep Sodhi, Jaspal Subhlok, Qiang Xu
IPPS
2007
IEEE
14 years 2 months ago
Programming Distributed Memory Sytems Using OpenMP
OpenMP has emerged as an important model and language extension for shared-memory parallel programming. On shared-memory platforms, OpenMP offers an intuitive, incremental approac...
Ayon Basumallik, Seung-Jai Min, Rudolf Eigenmann
IEEEPACT
2005
IEEE
14 years 2 months ago
Exploiting Coarse-Grained Parallelism to Accelerate Protein Motif Finding with a Network Processor
While general-purpose processors have only recently employed chip multiprocessor (CMP) architectures, network processors (NPs) have used heterogeneous multi-core architectures sin...
Ben Wun, Jeremy Buhler, Patrick Crowley